0

I'm working with a dataset in Python where I have a list of tuples, each representing an interval (start, end). I've encountered a scenario where some of these intervals overlap, and I need to merge these overlapping intervals into a single interval that covers the entire range of the overlapping intervals. The goal is to reduce the list to only include non-overlapping intervals.

For example, given the list [(1, 3), (2, 4), (5, 7), (6, 8)]

The desired output is [(1, 4), (5, 8)].

Here's what I've tried so far:

def merge_intervals(intervals):
    sorted_intervals = sorted(intervals, key=lambda x: x[0])
    merged = []
    for interval in sorted_intervals:
        if not merged or merged[-1][1] < interval[0]:
            merged.append(interval)
        else:
            merged[-1] = (merged[-1][0], max(merged[-1][1], interval[1]))
    return merged

my_intervals = [(1, 3), (2, 4), (5, 7), (6, 8)]
print(merge_intervals(my_intervals))

This solution seems to work, but I'm concerned about its efficiency, especially for very large lists of intervals. I'm looking for any advice on optimizing this algorithm for better performance or if there's a more "Pythonic" way to approach this problem. Additionally, I'm curious if there are built-in functions or libraries in Python that could simplify this task.

4
  • 1
    This looks reasonable to me. The sort is the most expensive step (for large lists), so you're looking at an O(n*log(n)) algorithm. Commented Apr 3, 2024 at 12:28
  • Would that be the most efficient possible solution? I am looking for the most optimal solution. Optimized at maximum, it should save processing which will save time and money. Commented Apr 3, 2024 at 12:38
  • For cleaner code: In line 3 use "merged = sorted_intervals[0] if sorted_intervals else []". That way you can skip the "not merged" check in line 5. Commented Apr 3, 2024 at 14:27
  • The worst-case computational complexity of the OP's code is O(nlogn), but if the input intervals are almost sorted, it becomes approximately O(n), thanks to Timsort. In this case, there is no computationally more efficient solution. However, if an iterator is acceptable for output, it could be implemented as a generator function. Conversely, if using numpy arrays for input and output is also acceptable, utilizing numba could be an option. Commented Apr 3, 2024 at 18:18

3 Answers 3

1

I not that good at python but I think this will help you, try this code:

def merge_intervals(intervals):
"""
Merge overlapping intervals into a single interval.

Args:
- intervals (list of tuples): List of intervals represented as tuples (start, end).

Returns:
- merged (list of tuples): List of non-overlapping intervals after merging.

Example:
>>> merge_intervals([(1, 3), (2, 4), (5, 7), (6, 8)])
[(1, 4), (5, 8)]
"""
sorted_intervals = sorted(intervals, key=lambda x: x[0])
merged = []
for interval in sorted_intervals:
    if not merged or merged[-1][1] < interval[0]:
        merged.append(interval)
    else:
        merged[-1] = (merged[-1][0], max(merged[-1][1], interval[1]))
return merged
my_intervals = [(1, 3), (2, 4), (5, 7), (6, 8)]
print(merge_intervals(my_intervals))d

And yeah, the output at least for me is exactly as you want:

[(1, 4), (5, 8)]

let me know if worked.

Sign up to request clarification or add additional context in comments.

Comments

1

I see nothing wrong with your code, it is quite pythonic (simple, clear and readable), there is no sugar syntax I can think of to improve your code, no comprehension, functional style (map, filter, reduce...) that can help in this way.

To address your efficiency question, here is a vectorized version of your task using numpy.

import numpy as np

my_intervals = [(1, 3), (2, 4), (5, 7), (6, 8), (9, 11), (10, 12), (11, 12), (1,2)]
my_intervals = np.array(my_intervals)

my_intervals.sort(axis=0)

start_bounds = my_intervals[:,0]
end_bounds = my_intervals[:,1]

start_bounds_filter = ~np.convolve(end_bounds >= np.concatenate([start_bounds[1:], [np.inf]]), [False, True], mode='same')
end_bounds_filter = np.flip(~np.convolve(np.flip(start_bounds <= np.concatenate([[-np.inf], end_bounds[:-1]])), [False, True], mode='same'))

result = np.vstack([start_bounds[start_bounds_filter], end_bounds[end_bounds_filter]]).T.tolist()

Using Jupyter %%timeit for benchmarking, you already see that your implentation is much faster (in the order of ns while the vectorized one in the order of micro seconds), and I also tried using the numba library for a JIT version of your implementation which had even worst results. Scaling the sample does not turn the tables in the performance.

Loop solution: old_sol Vectorized solution: new_sol

In summary, in this case simple is best (in clarity and performance), be confident it is readable and scales well.

Comments

1

You can do this linearly O(n) without sort.

from collections import defaultdict
from typing import Iterable

my_intervals = [(1, 3), (2, 4), (5, 7), (6, 8), (2, 3), (2, 3), (2, 4)]


def merger(intervals: Sequence[tuple]) -> Iterable[tuple]:
    max_val = max(i[1] for i in intervals)
    min_val = min(i[0] for i in intervals)
    breakpoints = [0] * (max_val - min_val + 1)

    min_val, max_val = intervals[0]
    for start, end in intervals:
        if end < start:
            raise ValueError(f"Improper interval: {start} !<= {end}")
        breakpoints[start - min_val] += 1
        breakpoints[end - min_val] -= 1
        min_val = start if start < min_val else min_val
        max_val = end if end > max_val else max_val

    res = []
    current_start = min_val
    marker = 0  # marker is > 0 when in an interval, else "dead space"
    for i in range(min_val, max_val + 1):
        marker += breakpoints[i - min_val]
        if current_start and marker == 0:  # close the interval
            end = i
            res.append((current_start, end))
            current_start = None
        elif not current_start and marker > 0:  # start an interval
            current_start = i
    return res

Output:

[(1, 4), (5, 8)]

8 Comments

This is not O(n) in the length of the input. It adds a loop over the range of values, so if the value range is large, it can take much longer. Consider the horrible performance if you give it [(1, 100000000000000000000000)] as input. It will never complete. So as a general solution, this is far worse than what OP posted.
@TomKarzes Good points and thank you for the comment. I believe the algorithm is O(n), but as you point out, it is obviously sensitive to extreme values. General case... Well, if the extreme bounds were within a couple hundred thousand, this algorithm is going to be several times faster when N is "large" (say over 10M entries) because the cost of the sort will dominate. So some caveats are in order...integer entries and "reasonable" bounds on extreme values. TBD if that fits OP's desires. General purpose without those caveats, I agree. Interesting question.
It's O(m+n), where n is the number of pairs and m is the full range of values. So unless you're certain the value ranges are extremely narrow (which I don't believe is the case), it's not a good solution.
I agree to your caveats, and I'm not sure how you generated any beliefs on the scale of the values; however for the conditions stated, it is around 3x faster than the OP. So, as with many things, "it depends".
The stated conditions said nothing about the value ranges. All they said was that the lists could be very long. So you can't assume the ranges will be small. Perhaps they are, and perhaps they aren't. OP's solution is a good general-purpose solution with O(n*log(n)) performance in the length of the input. The solution you posted is not general-purpose, but is specific for input that has a highly constrained range of values, failing catastrophically in the presence of very large value ranges. In that sense, it is not a general-purpose solution.
|

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service and acknowledge you have read our privacy policy.