show ggplot objects in rmarkdown as html svg code

Question

I would like to show ggplot objects on the browser as a svg using rmarkdown.

---
title: ""
output: html_document
---

```{r setup, include = FALSE}
library(svglite)
library(ggplot2)
knitr::opts_chunk$set(
      dev = "svglite",
      fig.ext = ".svg"
)
```

```{r, warning = F}
data(cars)

ggplot(mtcars, aes(mpg, qsec, color = factor(cyl))) +
      geom_point()

```

Everything works fine, but when I open it in Chrome and try to Inspect Element it turns out that the whole plot is within <img> tags. What I want to achieve is to create rmarkdown doc with html code with the whole ggplot.

I try to use htmlSVG function but it does not work on ggplot. I get an error:

Error in FUN(X[[i]], ...) : argumemt is not a character vector

However, it works very well on basic plot - htmlSVG(plot(data = sampled_df, z ~ price)) when I include it on rmarkdown.

Do you know it is possible to do the same thing with ggplot objects?

markus · Accepted Answer · 2023-01-06 16:10:32Z

4

I found a solution. All I had to do is to use svgstring from svglite which generate the whole code and then use htmltools::HTML.

---
title: ""
output: html_document
---

```{r setup, include = FALSE}
library(svglite)
library(ggplot2)
knitr::opts_chunk$set(
      dev = "svglite",
      fig.ext = ".svg"
)
```

```{r, warning = F, echo = F}
data(cars)

s <- svgstring()
ggplot(mtcars, aes(mpg, qsec, color = factor(cyl))) +
      geom_point()

htmltools::HTML(s())

invisible(
      dev.off()
)

```

I use invisible function in order to hide a message generating by dev.off().

edited Jan 6, 2023 at 16:10

markus

26.5k5 gold badges47 silver badges59 bronze badges

answered Sep 29, 2016 at 15:09

Nicolabo

1,38714 silver badges32 bronze badges

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