What explains the discrepancy in usage (82 GB vs 13 GB) that I see below?
Using
df:$ df -h / Filesystem Size Used Avail Use% Mounted on /dev/sda2 96G 82G 9.9G 90% /Using
du:$ sudo du -cshx / 13G / 13G total
-x option is a false friend as its purpose is to skip things. That option never gives you the complete picture.
To get a complete listing, use bind mounts and then du, ncdu, xdiskusage, baobab or whatever you wish on the bound directory without skip options:
mkdir /mnt/root
mount --bind / /mnt/root
ncdu /mnt/root
Then you might discover you have lots of stuff in /mnt/backup (because it wasn't mounted when the backup task ran), or a giant file in /dev (result of a dd if=/dev/zero of=/dev/sdx when no /dev/sdx existed and no tmpfs was mounted in /dev).
It could also be a deleted file still used by a process, but people don't usually ask about it as it's gone after reboot. It could also be a filesystem inconsistency, but that too would be gone after reboot (if it forces fsck in the process).
du "loses" track of space until I restarted the machine
du can't count it because it just traverses the directory.
ducan't see it?lsof +L1.