35 questions
0
votes
0
answers
41
views
HAPI FHIR heap space error when importing SNOMED
I am not able to upload recent Snomed data. Anyone managed to do this? please advise...
hapi-fhir-cli upload-terminology -d /Users/satv/Downloads/...
- 331
0
votes
1
answer
306
views
FHIR API with SNOMED CT showing error 'The latest version of the requested CodeSystem (http://snomed.info/sct) was not found.'
I am getting the below error while working with FHIR API and SNOMED CT showing error 'The latest version of the requested Code System (http://snomed.info/sct) was not found.')
{
"resource Type&...
0
votes
1
answer
108
views
Can I use the snomed qualifier value 90845004 Heavy (weight) for representaing a HealthcareService.specialty?
I'm using HealthcareService.specialty to represent various special care needs. I'm wondering if I can use the SNOMED qualifier value "90845004 Heavy (weight)" for one of them. Specifically, ...
- 1
-1
votes
1
answer
110
views
PHP cURL not aible to show response
<?php
$ch = curl_init();
//$concept_id = $_POST['concept_id'];
curl_setopt($ch, CURLOPT_URL, "https://browser.ihtsdotools.org/snowstorm/snomed-ct/browser/MAIN/2022-03-31/concepts/84114007&...
0
votes
1
answer
519
views
SHACL SPARQLTarget not validating the SPARQL query output nodes
I have a NodeShape with a sh:SPARQLTarget . I tried to run the Target SPARQL query in an ontology editor and it delivered results, but when I'm executing the same query in my custom target node shape ...
- 13
0
votes
0
answers
142
views
How to create a subgraph from a complex OWL graph which includes owl:intersectionOf, owl:equivalentClass, owl:restriction etc. using SPARQL CONSTRUCT
I want to create a subgraph consisting of only "Disorder sub-hierarchy" of SNOMED. I am trying to create this subgraph from the complete SNOMED-OWL graph using a SPARQL CONSTRUCT query. ...
- 13
0
votes
1
answer
188
views
How does SNOMED CT define SNOMED_CID?
Each of the concepts in SNOMED CT has the conceptId (SNOMED_CID). Could you please let me know how SNOMED CT defines the SNOMED_CID. Is there any numbering scheme that SNOMED CT follows? SNOMED terms ...
- 6,904
0
votes
1
answer
186
views
"patient recommended to drink water" - how to encode in SNOMED/FHIR
How would the procedure: "patient recommended to drink more water" be encoded as a SNOMED expression (or a FHIR procedure?)
Are there public guidelines for encoding records? SNOMED's docs seem to be ...
- 15.9k
1
vote
0
answers
67
views
Which coding/term dictionaries for air pollution indexes
It seems that neither LOINC nor SNOMED-CT have codes for air quality (such as the PM10, PM2.5 particulate measures, or nitrogen oxide or nitrogen dioxide).
Are there extensions which may cover these, ...
- 15.9k
0
votes
2
answers
214
views
openEHR, Snomed and Measurement units
I'm new to openEHR and snomed. I'm wanting to store information pack definition for a tobacco summary. How do I go about storing the measurement units (grams, oz, number of cigarettes)? Is there a ...
- 355
3
votes
0
answers
349
views
Using SPARQL to get the first entity of superclasses of a certain class
I use Jena from Java code and Blazegraph as a server, I have tried to query the first superclass in a path of a certain class, and of course, I didn't use either * or + with the predicate rdfs:...
- 41
1
vote
1
answer
85
views
Medical word pattern match or suggestion from free input text
I have planned to develop a prototype for academic purpose. I have list of snomed id with corresponding medical term. Some doctor write medical term in short expression so naturally those words have ...
- 1,960
1
vote
1
answer
1k
views
Hapi Fhir importing Snomed-CT
I am a newbie in Hapi Fhir, in Fhir also. I'm trying to import Snomed-CT / US version on Hapi Fhir. I'm using the client to do this, this way:
To run the server:
java -jar hapi-fhir-cli.jar run-...
- 3,737
2
votes
1
answer
2k
views
PyMedTermino Installation in python 3
I'm having trouble to install snomed for python 3.
I have a virtual environment.
The tutorial for instalation of snomed is in this link:
http://pythonhosted.org/PyMedTermino/tuto_en.html#installation
...
- 385
5
votes
2
answers
5k
views
Is there any free medical or clinical reports/corpus?
I am doing a research on Clinical Natural language processing.
Is there any clinical report that contains sentences, patient conditions, patient history, clinical terms, etc?
- 141
0
votes
1
answer
63
views
IEEE code database
As SNOMED and LOINC, I read that there is another universal standard for identifying medical terms called IEEE (whose database would also include fitness/diet/environmental data which I would ...
- 2,655
1
vote
1
answer
179
views
Slow *initial* mysql query
Running Mysql V5.6.22, running a complex query on a properly indexed database, the response time initially is very slow (10's of seconds). Subsequent queries (for different items) are very ...
- 4,073
0
votes
2
answers
133
views
Running multiple subqueries
I am pulling one code (ICD9) which is in table AbsDrgDiagnosis.Diagnosis. I need to pull another code (SNOMED_CT) which is in another table DMisNomenclatureMapCodes.CodeID when ...
- 49