For some reason I can't eval this simple string in mongo, I think it's because the $exists parameter.
mongo database --eval "db.products.find({'csv': {'$exists': false}}, {'original.name': true, 'original.sku': true})"
Your quotes are the wrong way around. Use ' on the wrapping of the statement rather than ". Just the important parts:
--eval 'db.products.find({ "csv": { "$exists": false } })'
exists, which doesn't exist. To prevent the interpolation, you can use single quotes. When you don't have any $ sign in your eval string, either single or double quotes will work.